| GO:0043565 | sequence-specific DNA binding | 40 |
| GO:0005634 | nucleus | 40 |
| GO:0003700 | transcription factor activity, sequence-specific DNA binding | 39 |
| GO:0006351 | transcription, DNA-templated | 38 |
| GO:0045944 | positive regulation of transcription from RNA polymerase II promoter | 2 |
| GO:0003690 | double-stranded DNA binding | 2 |
| GO:0008301 | DNA binding, bending | 2 |
| GO:0003705 | transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding | 2 |
| GO:0006366 | transcription from RNA polymerase II promoter | 2 |
| GO:0000122 | negative regulation of transcription from RNA polymerase II promoter | 2 |
| GO:0008134 | transcription factor binding | 2 |
| GO:0005667 | transcription factor complex | 2 |
| GO:0051090 | regulation of sequence-specific DNA binding transcription factor activity | 2 |
| GO:0007507 | heart development | 1 |
| GO:0007367 | segment polarity determination | 1 |
| GO:0043028 | cysteine-type endopeptidase regulator activity involved in apoptotic process | 1 |
| GO:0060914 | heart formation | 1 |
| GO:0043280 | positive regulation of cysteine-type endopeptidase activity involved in apoptotic process | 1 |
| GO:0001158 | enhancer sequence-specific DNA binding | 1 |
| GO:0007366 | periodic partitioning by pair rule gene | 1 |
| GO:0001707 | mesoderm formation | 1 |
| GO:0009888 | tissue development | 1 |
| GO:0007380 | specification of segmental identity, head | 1 |
| GO:0006309 | apoptotic DNA fragmentation | 1 |
| GO:0008595 | anterior/posterior axis specification, embryo | 1 |
| GO:0035058 | nonmotile primary cilium assembly | 1 |
| GO:0031624 | ubiquitin conjugating enzyme binding | 1 |
| GO:0009792 | embryo development ending in birth or egg hatching | 1 |
| GO:0030331 | estrogen receptor binding | 1 |
| GO:0010468 | regulation of gene expression | 1 |
| GO:0007350 | blastoderm segmentation | 1 |
