Welcome to the i5k insect phylogenetics and gene family web page!
This page hosts all the data associated with gene family and protein domain analyses in the i5K pilot paper:
The phylogeny below was inferred from single-copy orthogroups in each of the 6 multi-species orders along with 150 orthogroups that are single-copy between orders to resolve the deeper nodes. The species tree was used to perform ancestral reconstructions of gene-family counts using maximum likelihood (CAFE) for the 6 multi-species orders and parsimony (Dupliphy) for the entire tree. Data are available at three levels:
- As summaries of nodes, accessible by clicking on the phylogeny below.
- As summaries of orders/groups, accessible on the Order Data dropdown menu below.
- As summaries of families, accessible by entering the OrthoDB (v8) family ID below on the left.