| GO:0005634 | nucleus | 45 |
| GO:0003700 | transcription factor activity, sequence-specific DNA binding | 44 |
| GO:0007275 | multicellular organismal development | 41 |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | 35 |
| GO:0043565 | sequence-specific DNA binding | 10 |
| GO:0007367 | segment polarity determination | 3 |
| GO:0048100 | wing disc anterior/posterior pattern formation | 2 |
| GO:0007386 | compartment pattern specification | 2 |
| GO:0007474 | imaginal disc-derived wing vein specification | 2 |
| GO:0007400 | neuroblast fate determination | 2 |
| GO:0003677 | DNA binding | 2 |
| GO:0007388 | posterior compartment specification | 1 |
| GO:0000122 | negative regulation of transcription from RNA polymerase II promoter | 1 |
| GO:0048099 | anterior/posterior lineage restriction, imaginal disc | 1 |
| GO:0007487 | analia development | 1 |
| GO:0007485 | imaginal disc-derived male genitalia development | 1 |
| GO:0010629 | negative regulation of gene expression | 1 |
| GO:0035288 | anterior head segmentation | 1 |
| GO:0007486 | imaginal disc-derived female genitalia development | 1 |
| GO:0035289 | posterior head segmentation | 1 |
| GO:0007447 | imaginal disc pattern formation | 1 |
| GO:0045944 | positive regulation of transcription from RNA polymerase II promoter | 1 |
| GO:0016787 | hydrolase activity | 1 |
| GO:0035215 | genital disc development | 1 |
| GO:0007476 | imaginal disc-derived wing morphogenesis | 1 |
| GO:0035277 | spiracle morphogenesis, open tracheal system | 1 |
| GO:0050832 | defense response to fungus | 1 |
| GO:0000980 | RNA polymerase II distal enhancer sequence-specific DNA binding | 1 |
| GO:0007418 | ventral midline development | 1 |
| GO:0045892 | negative regulation of transcription, DNA-templated | 1 |
| GO:0010468 | regulation of gene expression | 1 |
| GO:0008406 | gonad development | 1 |
| GO:0035290 | trunk segmentation | 1 |
| GO:0007411 | axon guidance | 1 |
| GO:0006351 | transcription, DNA-templated | 1 |
| GO:0007448 | anterior/posterior pattern specification, imaginal disc | 1 |
| GO:0001158 | enhancer sequence-specific DNA binding | 1 |
| GO:0021960 | anterior commissure morphogenesis | 1 |
| GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 1 |
| GO:0035224 | genital disc anterior/posterior pattern formation | 1 |
